Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 IFNLR1-201ENST00000327535 4549 ntAPPRIS P4 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AK1-201ENST00000223836 736 ntTSL 3 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 MTCL1P1-201ENST00000446207 792 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 KRT8P10-201ENST00000450021 1447 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC245100.5-201ENST00000452108 331 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 PBX2P1-201ENST00000493219 1291 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AL136967.2-201ENST00000623968 743 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 WASF3-201ENST00000335327 4790 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AP001282.1-201ENST00000531301 1499 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC012508.2-201ENST00000567613 1472 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC007614.4-201ENST00000564048 1827 ntBASIC9.52□□□□□ -0.89
LINC00643Q86TS7 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AKNA-202ENST00000307564 7380 ntAPPRIS P2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CSPG4P13-202ENST00000567704 4801 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 ACO2-201ENST00000216254 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 DDT-203ENST00000403754 569 ntTSL 3 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 DDT-206ENST00000430101 573 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 PNMA6B-201ENST00000538162 1200 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 KRT18P61-201ENST00000585825 1298 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC9.51□□□□□ -0.89
LINC00643Q86TS7 AP000692.2-201ENST00000608391 879 ntBASIC9.51□□□□□ -0.89
LINC00643Q86TS7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms