Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
GFRA1P56159 REXO1L5P-201ENST00000622260 2098 ntBASIC13.73□□□□□ -0.21
GFRA1P56159 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.73□□□□□ -0.21
GFRA1P56159 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
GFRA1P56159 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
GFRA1P56159 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.73□□□□□ -0.21
GFRA1P56159 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.73□□□□□ -0.21
GFRA1P56159 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
GFRA1P56159 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
GFRA1P56159 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
GFRA1P56159 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 AC023024.2-201ENST00000623561 1993 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 AC006001.1-201ENST00000325130 474 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 AC099336.1-201ENST00000417053 1171 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 FAM197Y7-201ENST00000432892 766 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 RPS2P32-201ENST00000439199 892 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 RNA5SP486-201ENST00000515961 83 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.72□□□□□ -0.21
GFRA1P56159 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.72□□□□□ -0.21
GFRA1P56159 AC079316.1-201ENST00000548397 411 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
GFRA1P56159 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.72□□□□□ -0.21
GFRA1P56159 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.72□□□□□ -0.21
GFRA1P56159 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 AL157414.3-201ENST00000624276 1954 ntBASIC13.72□□□□□ -0.21
GFRA1P56159 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
GFRA1P56159 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
GFRA1P56159 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.71□□□□□ -0.21
GFRA1P56159 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 MROH4P-201ENST00000431302 1578 ntBASIC13.71□□□□□ -0.21
GFRA1P56159 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.71□□□□□ -0.21
GFRA1P56159 AC103702.1-201ENST00000548801 2630 ntBASIC13.71□□□□□ -0.21
GFRA1P56159 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
GFRA1P56159 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
GFRA1P56159 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 CD8B2-202ENST00000417670 633 ntBASIC13.71□□□□□ -0.21
GFRA1P56159 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 CSF2RBP1-201ENST00000447905 391 ntBASIC13.71□□□□□ -0.21
GFRA1P56159 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.71□□□□□ -0.21
GFRA1P56159 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.71□□□□□ -0.21
GFRA1P56159 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.71□□□□□ -0.21
GFRA1P56159 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
GFRA1P56159 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.71□□□□□ -0.22
GFRA1P56159 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
GFRA1P56159 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms