Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TERF1P3-201ENST00000505638 1227 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC092552.1-201ENST00000547243 906 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT39Q6A163 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT39Q6A163 TMEM261P1-201ENST00000604899 340 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC093525.8-201ENST00000624099 1342 ntBASIC16.62■□□□□ 0.25
KRT39Q6A163 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT39Q6A163 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT39Q6A163 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.62■□□□□ 0.25
KRT39Q6A163 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.61■□□□□ 0.25
KRT39Q6A163 MYCLP2-201ENST00000449268 967 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
KRT39Q6A163 AC120045.2-201ENST00000567334 178 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 AC007431.3-201ENST00000623221 587 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 LINC00528-201ENST00000600723 2160 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
KRT39Q6A163 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
KRT39Q6A163 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
KRT39Q6A163 AL359258.3-201ENST00000622910 2331 ntBASIC16.61■□□□□ 0.25
KRT39Q6A163 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.6■□□□□ 0.25
KRT39Q6A163 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.6■□□□□ 0.25
KRT39Q6A163 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 REXO1L2P-201ENST00000425429 2069 ntBASIC16.6■□□□□ 0.25
KRT39Q6A163 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.6■□□□□ 0.25
KRT39Q6A163 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.6■□□□□ 0.25
KRT39Q6A163 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms