Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 REXO1L4P-201ENST00000605109 1937 ntBASIC12.53□□□□□ -0.4
LMO4P61968 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC12.53□□□□□ -0.4
LMO4P61968 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
LMO4P61968 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC12.53□□□□□ -0.4
LMO4P61968 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.53□□□□□ -0.4
LMO4P61968 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
LMO4P61968 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.53□□□□□ -0.4
LMO4P61968 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.53□□□□□ -0.4
LMO4P61968 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC12.53□□□□□ -0.4
LMO4P61968 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.53□□□□□ -0.4
LMO4P61968 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
LMO4P61968 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LMO4P61968 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.4
LMO4P61968 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC12.52□□□□□ -0.4
LMO4P61968 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
LMO4P61968 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
LMO4P61968 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LMO4P61968 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.52□□□□□ -0.4
LMO4P61968 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
LMO4P61968 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.52□□□□□ -0.41
LMO4P61968 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.52□□□□□ -0.41
LMO4P61968 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC12.52□□□□□ -0.41
LMO4P61968 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC12.52□□□□□ -0.41
LMO4P61968 AC244452.3-201ENST00000636814 210 ntBASIC12.52□□□□□ -0.41
LMO4P61968 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 FKBP4P6-201ENST00000457486 1332 ntBASIC12.52□□□□□ -0.41
LMO4P61968 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LMO4P61968 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
LMO4P61968 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
LMO4P61968 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AL137783.1-201ENST00000623494 1896 ntBASIC12.51□□□□□ -0.41
LMO4P61968 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AL136309.1-201ENST00000403917 691 ntBASIC12.51□□□□□ -0.41
LMO4P61968 AC004945.1-201ENST00000416738 983 ntBASIC12.51□□□□□ -0.41
LMO4P61968 CALR4P-201ENST00000431943 946 ntBASIC12.51□□□□□ -0.41
LMO4P61968 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 HIST2H2BB-201ENST00000449108 381 ntBASIC12.51□□□□□ -0.41
LMO4P61968 AKR7A2P1-201ENST00000460134 915 ntBASIC12.51□□□□□ -0.41
LMO4P61968 AC091804.1-201ENST00000486888 567 ntBASIC12.51□□□□□ -0.41
LMO4P61968 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC12.51□□□□□ -0.41
LMO4P61968 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms