Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VPS4BO75351 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS4BO75351 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS4BO75351 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS4BO75351 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 AC017083.2-201ENST00000608069 979 ntBASIC15.17■□□□□ 0.02
VPS4BO75351 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.17■□□□□ 0.02
VPS4BO75351 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VPS4BO75351 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS4BO75351 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS4BO75351 LINC00528-201ENST00000600723 2160 ntBASIC15.17■□□□□ 0.02
VPS4BO75351 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
VPS4BO75351 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS4BO75351 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.16■□□□□ 0.02
VPS4BO75351 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.16■□□□□ 0.02
VPS4BO75351 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VPS4BO75351 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VPS4BO75351 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4BO75351 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS4BO75351 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS4BO75351 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 AL607033.1-201ENST00000623900 1599 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
VPS4BO75351 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 AC138969.3-201ENST00000546612 1459 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 AC138932.2-201ENST00000548268 1459 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 AC126755.4-201ENST00000549796 1459 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
VPS4BO75351 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 AC005089.1-201ENST00000619486 2241 ntBASIC15.15■□□□□ 0.02
VPS4BO75351 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS4BO75351 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms