Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.41■□□□□ 0.7
NPHP1O15259 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
NPHP1O15259 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NPHP1O15259 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
NPHP1O15259 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
NPHP1O15259 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
NPHP1O15259 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 RAC2-202ENST00000401529 569 ntTSL 4 BASIC19.4■□□□□ 0.7
NPHP1O15259 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.4■□□□□ 0.7
NPHP1O15259 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.4■□□□□ 0.7
NPHP1O15259 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NPHP1O15259 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.4■□□□□ 0.7
NPHP1O15259 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NPHP1O15259 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
NPHP1O15259 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.7
NPHP1O15259 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC19.39■□□□□ 0.7
NPHP1O15259 AC011477.6-201ENST00000604980 1927 ntBASIC19.39■□□□□ 0.7
NPHP1O15259 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.39■□□□□ 0.69
NPHP1O15259 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 ACTBP8-201ENST00000403258 1108 ntBASIC19.39■□□□□ 0.69
NPHP1O15259 CD8B2-202ENST00000417670 633 ntBASIC19.39■□□□□ 0.69
NPHP1O15259 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.39■□□□□ 0.69
NPHP1O15259 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
NPHP1O15259 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.39■□□□□ 0.69
NPHP1O15259 AC114812.1-204ENST00000449669 728 ntBASIC19.39■□□□□ 0.69
NPHP1O15259 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.39■□□□□ 0.69
NPHP1O15259 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.39■□□□□ 0.69
NPHP1O15259 GAPDHP40-201ENST00000505218 1006 ntBASIC19.39■□□□□ 0.69
NPHP1O15259 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.39■□□□□ 0.69
NPHP1O15259 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.39■□□□□ 0.69
NPHP1O15259 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.39■□□□□ 0.69
NPHP1O15259 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
NPHP1O15259 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NPHP1O15259 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
NPHP1O15259 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
NPHP1O15259 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NPHP1O15259 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms