Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SEMA3DO95025 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AC004890.2-204ENST00000481968 304 ntBASIC14.84□□□□□ -0.03
SEMA3DO95025 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.84□□□□□ -0.03
SEMA3DO95025 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.84□□□□□ -0.03
SEMA3DO95025 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AC009407.1-201ENST00000568958 598 ntBASIC14.84□□□□□ -0.03
SEMA3DO95025 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SEMA3DO95025 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.84□□□□□ -0.03
SEMA3DO95025 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SEMA3DO95025 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SEMA3DO95025 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SEMA3DO95025 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.83□□□□□ -0.03
SEMA3DO95025 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
SEMA3DO95025 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.83□□□□□ -0.03
SEMA3DO95025 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.83□□□□□ -0.03
SEMA3DO95025 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SEMA3DO95025 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
SEMA3DO95025 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SEMA3DO95025 AC023908.3-201ENST00000564211 3047 ntBASIC14.83□□□□□ -0.04
SEMA3DO95025 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SEMA3DO95025 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 AC022144.1-201ENST00000602255 1580 ntBASIC14.83□□□□□ -0.04
SEMA3DO95025 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SEMA3DO95025 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.83□□□□□ -0.04
SEMA3DO95025 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.83□□□□□ -0.04
SEMA3DO95025 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.83□□□□□ -0.04
SEMA3DO95025 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.83□□□□□ -0.04
SEMA3DO95025 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.83□□□□□ -0.04
SEMA3DO95025 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.83□□□□□ -0.04
SEMA3DO95025 AC093512.1-201ENST00000617969 520 ntBASIC14.83□□□□□ -0.04
SEMA3DO95025 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.83□□□□□ -0.04
SEMA3DO95025 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
SEMA3DO95025 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.83□□□□□ -0.04
SEMA3DO95025 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.83□□□□□ -0.04
SEMA3DO95025 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SEMA3DO95025 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SEMA3DO95025 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.82□□□□□ -0.04
SEMA3DO95025 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SEMA3DO95025 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SEMA3DO95025 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SEMA3DO95025 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
SEMA3DO95025 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms