Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
MSH4O15457 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MSH4O15457 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH4O15457 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.23■□□□□ 0.35
MSH4O15457 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 REXO1L2P-201ENST00000425429 2069 ntBASIC17.22■□□□□ 0.35
MSH4O15457 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH4O15457 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.22■□□□□ 0.35
MSH4O15457 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH4O15457 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.22■□□□□ 0.35
MSH4O15457 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.22■□□□□ 0.35
MSH4O15457 AC007551.1-201ENST00000457394 519 ntBASIC17.22■□□□□ 0.35
MSH4O15457 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.22■□□□□ 0.35
MSH4O15457 IGHV3-71-201ENST00000523324 359 ntBASIC17.22■□□□□ 0.35
MSH4O15457 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.22■□□□□ 0.35
MSH4O15457 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
MSH4O15457 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.22■□□□□ 0.35
MSH4O15457 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
MSH4O15457 AC025279.2-201ENST00000569730 653 ntBASIC17.22■□□□□ 0.35
MSH4O15457 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.22■□□□□ 0.35
MSH4O15457 MIR6775-201ENST00000617557 69 ntBASIC17.22■□□□□ 0.35
MSH4O15457 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH4O15457 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
MSH4O15457 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
MSH4O15457 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH4O15457 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH4O15457 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 AC234783.1-201ENST00000441761 496 ntBASIC17.21■□□□□ 0.35
MSH4O15457 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 AC022210.1-201ENST00000449856 793 ntBASIC17.21■□□□□ 0.35
MSH4O15457 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
MSH4O15457 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 AC119751.2-201ENST00000504529 210 ntBASIC17.21■□□□□ 0.35
MSH4O15457 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
MSH4O15457 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
MSH4O15457 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH4O15457 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MSH4O15457 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH4O15457 LRRC59-203ENST00000576448 1531 ntBASIC17.21■□□□□ 0.34
MSH4O15457 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms