Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC009090.5-201ENST00000624886 2285 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AL359711.2-201ENST00000563105 872 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AC020658.6-201ENST00000623564 1870 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 AP002414.2-201ENST00000591780 3365 ntBASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM39Q9HCM9 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 GAPDHP21-201ENST00000450301 1010 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 ENPP7P5-201ENST00000541031 1031 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC120045.2-201ENST00000567334 178 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC093813.1-201ENST00000605066 256 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 AC063926.2-201ENST00000623766 1308 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 KRT8P22-201ENST00000562317 1415 ntBASIC15.34■□□□□ 0.05
TRIM39Q9HCM9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.33■□□□□ 0.05
TRIM39Q9HCM9 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms