Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 AL365209.1-201ENST00000624418 6473 ntBASIC15.02■□□□□ -0
CLIP3Q96DZ5 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 AC106881.1-201ENST00000605849 3329 ntBASIC15.02■□□□□ -0
CLIP3Q96DZ5 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 MIR648-201ENST00000385046 94 ntBASIC15.02■□□□□ -0
CLIP3Q96DZ5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 AC098850.1-201ENST00000419919 790 ntBASIC15.02■□□□□ -0
CLIP3Q96DZ5 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.02■□□□□ -0
CLIP3Q96DZ5 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.02■□□□□ -0
CLIP3Q96DZ5 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
CLIP3Q96DZ5 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 RPL13P2-201ENST00000440687 659 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TTTY23B-201ENST00000442790 549 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 GPR53P-205ENST00000457298 1084 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 RN7SL399P-201ENST00000471648 279 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TMEM261P1-201ENST00000604899 340 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AL158212.4-201ENST00000624062 1286 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 CYP2T1P-202ENST00000641596 2535 ntBASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLIP3Q96DZ5 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLIP3Q96DZ5 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLIP3Q96DZ5 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15□□□□□ -0.01
CLIP3Q96DZ5 AC026691.1-201ENST00000602502 2017 ntBASIC15□□□□□ -0.01
CLIP3Q96DZ5 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms