Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AC008267.1-201ENST00000474858 1069 ntBASIC14.9□□□□□ -0.02
COL28A1Q2UY09 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 BRI3BPP1-201ENST00000594224 787 ntBASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 HLA-C-210ENST00000640219 976 ntBASIC14.9□□□□□ -0.02
COL28A1Q2UY09 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 MTHFR-217ENST00000641820 1569 ntBASIC14.9□□□□□ -0.02
COL28A1Q2UY09 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL28A1Q2UY09 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC134915.1-201ENST00000426461 574 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 C2orf27AP3-201ENST00000434123 579 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC012441.1-201ENST00000446669 685 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 FTLP1-201ENST00000449155 526 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 FAM86LP-201ENST00000478302 853 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC245884.6-201ENST00000515672 1067 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 MIR4741-201ENST00000579822 90 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 EEF1DP1-201ENST00000585891 896 ntBASIC14.89□□□□□ -0.03
COL28A1Q2UY09 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.89□□□□□ -0.03
COL28A1Q2UY09 AC097724.1-201ENST00000609581 426 ntBASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms