Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 ANKRD19P-201ENST00000338192 862 ntBASIC15.27■□□□□ 0.04
SRP54P61011 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 KLF2P4-201ENST00000451959 1225 ntBASIC15.27■□□□□ 0.04
SRP54P61011 CTBP2P5-201ENST00000454986 1264 ntBASIC15.27■□□□□ 0.04
SRP54P61011 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.27■□□□□ 0.04
SRP54P61011 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
SRP54P61011 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.27■□□□□ 0.04
SRP54P61011 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.27■□□□□ 0.04
SRP54P61011 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.27■□□□□ 0.04
SRP54P61011 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
SRP54P61011 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.27■□□□□ 0.04
SRP54P61011 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
SRP54P61011 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.27■□□□□ 0.03
SRP54P61011 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
SRP54P61011 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
SRP54P61011 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SRP54P61011 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
SRP54P61011 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
SRP54P61011 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.27■□□□□ 0.03
SRP54P61011 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.27■□□□□ 0.03
SRP54P61011 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.27■□□□□ 0.03
SRP54P61011 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SRP54P61011 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.26■□□□□ 0.03
SRP54P61011 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 AL138799.1-201ENST00000448213 1675 ntBASIC15.26■□□□□ 0.03
SRP54P61011 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.26■□□□□ 0.03
SRP54P61011 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.26■□□□□ 0.03
SRP54P61011 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 AC092933.1-201ENST00000393644 945 ntBASIC15.26■□□□□ 0.03
SRP54P61011 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.26■□□□□ 0.03
SRP54P61011 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.26■□□□□ 0.03
SRP54P61011 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
SRP54P61011 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SRP54P61011 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.26■□□□□ 0.03
SRP54P61011 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SRP54P61011 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SRP54P61011 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.26■□□□□ 0.03
SRP54P61011 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SRP54P61011 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SRP54P61011 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SRP54P61011 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.25■□□□□ 0.03
SRP54P61011 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SRP54P61011 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.25■□□□□ 0.03
SRP54P61011 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
SRP54P61011 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SRP54P61011 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms