Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
MRE11P49959 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRE11P49959 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRE11P49959 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MRE11P49959 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRE11P49959 AC099521.3-201ENST00000624251 2938 ntBASIC18.12■□□□□ 0.49
MRE11P49959 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 TNN-203ENST00000622870 3719 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 AC027612.1-201ENST00000445234 2395 ntBASIC18.12■□□□□ 0.49
MRE11P49959 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC18.12■□□□□ 0.49
MRE11P49959 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 GALC-206ENST00000544807 2528 ntTSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
MRE11P49959 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
MRE11P49959 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.12■□□□□ 0.49
MRE11P49959 AC002472.2-201ENST00000442739 958 ntBASIC18.12■□□□□ 0.49
MRE11P49959 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.12■□□□□ 0.49
MRE11P49959 AP000344.2-201ENST00000512987 629 ntBASIC18.12■□□□□ 0.49
MRE11P49959 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.12■□□□□ 0.49
MRE11P49959 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
MRE11P49959 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
MRE11P49959 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.12■□□□□ 0.49
MRE11P49959 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRE11P49959 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.11■□□□□ 0.49
MRE11P49959 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 AC089987.1-201ENST00000551654 2209 ntBASIC18.11■□□□□ 0.49
MRE11P49959 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.11■□□□□ 0.49
MRE11P49959 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 AC093214.1-201ENST00000511688 1107 ntBASIC18.11■□□□□ 0.49
MRE11P49959 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.11■□□□□ 0.49
MRE11P49959 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.11■□□□□ 0.49
MRE11P49959 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.11■□□□□ 0.49
MRE11P49959 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC18.11■□□□□ 0.49
MRE11P49959 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
MRE11P49959 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRE11P49959 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC18.1■□□□□ 0.49
MRE11P49959 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC18.1■□□□□ 0.49
MRE11P49959 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MRE11P49959 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC18.1■□□□□ 0.49
MRE11P49959 AP001282.1-201ENST00000531301 1499 ntBASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms