Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VIMP08670 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 DMBT1P1-203ENST00000636837 4628 ntBASIC15.6■□□□□ 0.09
VIMP08670 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.6■□□□□ 0.09
VIMP08670 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.6■□□□□ 0.09
VIMP08670 LINC01711-201ENST00000598340 967 ntBASIC15.6■□□□□ 0.09
VIMP08670 AC025062.2-201ENST00000605477 670 ntBASIC15.6■□□□□ 0.09
VIMP08670 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 AC152010.1-201ENST00000415779 2006 ntBASIC15.6■□□□□ 0.09
VIMP08670 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
VIMP08670 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.6■□□□□ 0.09
VIMP08670 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VIMP08670 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.59■□□□□ 0.09
VIMP08670 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 AC089987.1-201ENST00000551654 2209 ntBASIC15.59■□□□□ 0.09
VIMP08670 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
VIMP08670 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
VIMP08670 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 MRPL20P1-201ENST00000400819 433 ntBASIC15.59■□□□□ 0.09
VIMP08670 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 ATP5G2P1-201ENST00000433580 426 ntBASIC15.59■□□□□ 0.09
VIMP08670 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 FGFR3P6-201ENST00000457012 610 ntBASIC15.59■□□□□ 0.09
VIMP08670 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.59■□□□□ 0.09
VIMP08670 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 IGHV3-65-201ENST00000523210 341 ntBASIC15.59■□□□□ 0.09
VIMP08670 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.59■□□□□ 0.09
VIMP08670 AL078644.1-201ENST00000609881 752 ntBASIC15.59■□□□□ 0.09
VIMP08670 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 AL645728.2-201ENST00000641974 660 ntBASIC15.59■□□□□ 0.09
VIMP08670 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
VIMP08670 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VIMP08670 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
VIMP08670 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
VIMP08670 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
VIMP08670 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms