Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.81□□□□□ -0.04
PCDHGA1Q9Y5H4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AL139094.1-201ENST00000405549 1188 ntBASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 ZACNP1-201ENST00000612259 710 ntBASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AC148477.4-201ENST00000613430 1793 ntBASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PCDHGA1Q9Y5H4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 CYP46A4P-201ENST00000414953 267 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 MIR4706-201ENST00000582134 82 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AC097724.1-201ENST00000609581 426 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AP001505.2-201ENST00000616815 443 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AC018892.3-201ENST00000623986 2499 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AL603764.1-201ENST00000636452 321 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 AC128714.1-201ENST00000637035 887 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms