Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AP001065.2-201ENST00000617205 644 ntBASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 MIR6842-201ENST00000612539 65 ntBASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC133540.1-201ENST00000620845 1019 ntBASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 AC074138.1-201ENST00000611182 1303 ntBASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 LILRP1-201ENST00000444199 1370 ntBASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHANK3Q9BYB0 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 ZBED1P1-201ENST00000502364 1930 ntBASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 MIR4522-201ENST00000584932 87 ntBASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 AC025262.2-201ENST00000623975 1056 ntBASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 AC092299.1-201ENST00000632679 757 ntBASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC19.41■□□□□ 0.7
SHANK3Q9BYB0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 MIR557-201ENST00000385239 98 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AL512430.1-201ENST00000392575 860 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AP000358.1-201ENST00000456260 156 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AL022334.2-201ENST00000610000 484 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AC087481.3-201ENST00000602886 1894 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 AC020916.1-201ENST00000587762 1774 ntBASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC19.4■□□□□ 0.7
SHANK3Q9BYB0 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AC239868.1-201ENST00000369385 493 ntBASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AP000356.3-201ENST00000382243 753 ntBASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 IDS-203ENST00000428056 1213 ntTSL 2 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 DNAJB1P1-201ENST00000429417 1024 ntBASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 AC008825.2-201ENST00000603374 718 ntBASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms