Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF41Q9H4P4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 AC067930.6-201ENST00000623257 4947 ntBASIC18.19■□□□□ 0.5
RNF41Q9H4P4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 AP005019.2-201ENST00000615104 511 ntBASIC18.19■□□□□ 0.5
RNF41Q9H4P4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 AC023024.2-201ENST00000623561 1993 ntBASIC18.19■□□□□ 0.5
RNF41Q9H4P4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF41Q9H4P4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC005034.1-201ENST00000426657 489 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 TTTY23B-201ENST00000442790 549 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 MIR5189-201ENST00000577370 114 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC132938.2-201ENST00000579188 680 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 IGHV3-72-202ENST00000621503 303 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 RPSAP52-203ENST00000622976 1023 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AL591163.1-201ENST00000641757 987 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AC012508.2-201ENST00000567613 1472 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 AL162727.3-201ENST00000635661 2787 ntBASIC18.18■□□□□ 0.5
RNF41Q9H4P4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF41Q9H4P4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 AC073347.1-201ENST00000421633 2643 ntBASIC18.17■□□□□ 0.5
RNF41Q9H4P4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms