Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NKX2-3Q8TAU0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AC104457.1-201ENST00000401024 814 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 BCRP2-202ENST00000447763 634 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 BCRP6-201ENST00000510112 632 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 BCRP7-201ENST00000511549 544 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 PTP4A1P2-201ENST00000546033 454 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 NIFKP4-201ENST00000567275 1192 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 LINC00528-201ENST00000600723 2160 ntBASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NKX2-3Q8TAU0 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AC007787.1-201ENST00000588095 1583 ntBASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CALR4P-201ENST00000431943 946 ntBASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AC093433.1-201ENST00000458048 571 ntBASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AC091271.1-201ENST00000611877 1162 ntBASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 AC012183.1-201ENST00000625197 499 ntBASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
NKX2-3Q8TAU0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 AC148477.4-201ENST00000613430 1793 ntBASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NKX2-3Q8TAU0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms