Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 BAATP1-201ENST00000412284 1225 ntBASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AC023310.1-201ENST00000554836 735 ntBASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AC061975.2-201ENST00000581722 295 ntBASIC14.94□□□□□ -0.02
COL28A1Q2UY09 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AC138627.1-207ENST00000641560 1006 ntBASIC14.94□□□□□ -0.02
COL28A1Q2UY09 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 TCAF2P1-201ENST00000291129 2421 ntBASIC14.93□□□□□ -0.02
COL28A1Q2UY09 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC114501.1-201ENST00000445949 172 ntBASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC004898.1-201ENST00000451057 766 ntBASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AL591846.1-201ENST00000451736 433 ntBASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC106760.1-201ENST00000508690 800 ntBASIC14.93□□□□□ -0.02
COL28A1Q2UY09 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.93□□□□□ -0.02
COL28A1Q2UY09 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AC134312.5-201ENST00000568031 1313 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms