Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC023906.1-201ENST00000486386 453 ntBASIC9.26□□□□□ -0.93
HSPG2P98160 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC9.26□□□□□ -0.93
HSPG2P98160 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC9.26□□□□□ -0.93
HSPG2P98160 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC9.26□□□□□ -0.93
HSPG2P98160 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC9.26□□□□□ -0.93
HSPG2P98160 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
HSPG2P98160 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC9.26□□□□□ -0.93
HSPG2P98160 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 AC092570.1-201ENST00000414446 469 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 BX088651.3-201ENST00000418155 352 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 MIR4472-1-201ENST00000584349 80 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 NAV1-210ENST00000593583 726 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC9.25□□□□□ -0.93
HSPG2P98160 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 BAX-205ENST00000391871 687 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 FAM86B3P-203ENST00000523992 854 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 AC124068.2-201ENST00000569473 1109 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 GEMIN8P4-201ENST00000380526 729 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 KRT18P46-201ENST00000435568 1279 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC9.25□□□□□ -0.93
HSPG2P98160 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 MIR3188-201ENST00000583494 85 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC9.25□□□□□ -0.93
HSPG2P98160 API5-208ENST00000531273 1868 ntTSL 2 BASIC9.25□□□□□ -0.93
HSPG2P98160 AL137783.1-201ENST00000623494 1896 ntBASIC9.25□□□□□ -0.93
HSPG2P98160 PGR-209ENST00000617858 2816 ntTSL 5 BASIC9.25□□□□□ -0.93
HSPG2P98160 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
HSPG2P98160 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC9.25□□□□□ -0.93
HSPG2P98160 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC9.24□□□□□ -0.93
HSPG2P98160 AL592076.1-201ENST00000424448 303 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 RPSAP15-201ENST00000448168 861 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC9.24□□□□□ -0.93
HSPG2P98160 RN7SL846P-201ENST00000467429 292 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 MIR6746-201ENST00000620971 63 ntBASIC9.24□□□□□ -0.93
HSPG2P98160 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC9.24□□□□□ -0.93
HSPG2P98160 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
HSPG2P98160 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms