Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 AL133267.1-201ENST00000398220 340 ntBASIC15.08■□□□□ 0
HNF4AP41235 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 AC015922.1-201ENST00000421102 1152 ntBASIC15.08■□□□□ 0
HNF4AP41235 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.08■□□□□ 0
HNF4AP41235 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 INGX-202ENST00000489074 768 ntBASIC15.08■□□□□ 0
HNF4AP41235 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 AC015910.1-201ENST00000579400 975 ntBASIC15.08■□□□□ 0
HNF4AP41235 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.08■□□□□ 0
HNF4AP41235 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.08■□□□□ 0
HNF4AP41235 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HNF4AP41235 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.08■□□□□ 0
HNF4AP41235 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.08■□□□□ 0
HNF4AP41235 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 MYO15B-237ENST00000642007 4893 ntBASIC15.07■□□□□ 0
HNF4AP41235 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.07■□□□□ 0
HNF4AP41235 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 RPL13P2-201ENST00000440687 659 ntBASIC15.07■□□□□ 0
HNF4AP41235 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.07■□□□□ 0
HNF4AP41235 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 ZNF890P-202ENST00000530367 1156 ntBASIC15.07■□□□□ 0
HNF4AP41235 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.07■□□□□ 0
HNF4AP41235 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.07■□□□□ 0
HNF4AP41235 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.07■□□□□ 0
HNF4AP41235 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.07■□□□□ 0
HNF4AP41235 AF228730.6-201ENST00000641497 218 ntBASIC15.07■□□□□ 0
HNF4AP41235 AC084121.3-201ENST00000641716 218 ntBASIC15.07■□□□□ 0
HNF4AP41235 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.07■□□□□ 0
HNF4AP41235 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.07■□□□□ 0
HNF4AP41235 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.07■□□□□ 0
HNF4AP41235 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 TCAF2P1-201ENST00000291129 2421 ntBASIC15.06■□□□□ 0
HNF4AP41235 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms