Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.22■□□□□ 0.51
BRCA1P38398 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC18.22■□□□□ 0.51
BRCA1P38398 THY1-209ENST00000580275 578 ntTSL 3 BASIC18.22■□□□□ 0.51
BRCA1P38398 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 AC007326.1-201ENST00000604539 458 ntBASIC18.22■□□□□ 0.51
BRCA1P38398 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC18.22■□□□□ 0.51
BRCA1P38398 AL360270.3-201ENST00000609118 1348 ntBASIC18.22■□□□□ 0.51
BRCA1P38398 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
BRCA1P38398 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.22■□□□□ 0.51
BRCA1P38398 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC18.22■□□□□ 0.51
BRCA1P38398 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
BRCA1P38398 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC18.22■□□□□ 0.51
BRCA1P38398 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
BRCA1P38398 AC099398.1-201ENST00000567919 2776 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.21■□□□□ 0.51
BRCA1P38398 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.21■□□□□ 0.51
BRCA1P38398 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.21■□□□□ 0.51
BRCA1P38398 AC011676.5-201ENST00000624864 2660 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.21■□□□□ 0.51
BRCA1P38398 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
BRCA1P38398 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC18.21■□□□□ 0.51
BRCA1P38398 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC18.21■□□□□ 0.51
BRCA1P38398 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
BRCA1P38398 RN7SL470P-201ENST00000583069 259 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 MIR2392-201ENST00000584881 84 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC18.21■□□□□ 0.51
BRCA1P38398 AC002472.4-201ENST00000641915 272 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 HLA-DQB1-202ENST00000399079 1501 ntBASIC18.21■□□□□ 0.51
BRCA1P38398 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
BRCA1P38398 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
BRCA1P38398 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.21■□□□□ 0.51
BRCA1P38398 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
BRCA1P38398 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
BRCA1P38398 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
BRCA1P38398 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 UROS-201ENST00000368774 744 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.2■□□□□ 0.5
BRCA1P38398 AGPAT5P1-201ENST00000455855 1019 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 AC093909.3-201ENST00000504783 336 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 RNA5SP417-201ENST00000516459 108 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.2■□□□□ 0.5
BRCA1P38398 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.2■□□□□ 0.5
BRCA1P38398 AP001184.1-201ENST00000637936 376 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 LINC02447-202ENST00000501888 2146 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 AL137783.1-201ENST00000623494 1896 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.2■□□□□ 0.5
BRCA1P38398 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 AL592076.1-201ENST00000424448 303 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.2■□□□□ 0.5
BRCA1P38398 AC084752.1-201ENST00000509766 622 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.2■□□□□ 0.5
BRCA1P38398 AC106047.2-201ENST00000511723 743 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 AC011471.3-201ENST00000623576 402 ntBASIC18.2■□□□□ 0.5
BRCA1P38398 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
BRCA1P38398 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.2■□□□□ 0.5
BRCA1P38398 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
BRCA1P38398 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
BRCA1P38398 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC18.19■□□□□ 0.5
BRCA1P38398 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
BRCA1P38398 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms