Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 AL512343.1-201ENST00000605837 169 ntBASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 AL162727.3-201ENST00000635661 2787 ntBASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 KRT8P14-201ENST00000414254 1442 ntBASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 AC012508.2-201ENST00000567613 1472 ntBASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 IGHV3-71-201ENST00000523324 359 ntBASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP4AQ9BY43 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AL158070.2-201ENST00000623713 1621 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 BCRP2-202ENST00000447763 634 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AC007551.1-201ENST00000457394 519 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 BCRP6-201ENST00000510112 632 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 BCRP7-201ENST00000511549 544 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AP000812.2-201ENST00000538934 718 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 RN7SL48P-201ENST00000579283 293 ntBASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.67■□□□□ 0.74
CHMP4AQ9BY43 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms