Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
IFT140Q96RY7 MTHFR-217ENST00000641820 1569 ntBASIC24.82■■□□□ 1.56
IFT140Q96RY7 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 AC006449.5-201ENST00000610658 2098 ntBASIC24.82■■□□□ 1.56
IFT140Q96RY7 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
IFT140Q96RY7 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
IFT140Q96RY7 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
IFT140Q96RY7 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
IFT140Q96RY7 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 THY1-209ENST00000580275 578 ntTSL 3 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 MME-218ENST00000625667 363 ntTSL 5 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC24.82■■□□□ 1.56
IFT140Q96RY7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 TLE1P1-201ENST00000422965 589 ntBASIC24.81■■□□□ 1.56
IFT140Q96RY7 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 PGAM1P12-201ENST00000505622 748 ntBASIC24.81■■□□□ 1.56
IFT140Q96RY7 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 AC027601.3-201ENST00000622907 509 ntBASIC24.81■■□□□ 1.56
IFT140Q96RY7 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
IFT140Q96RY7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
IFT140Q96RY7 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 REXO1L4P-201ENST00000605109 1937 ntBASIC24.8■■□□□ 1.56
IFT140Q96RY7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 FAM86B3P-203ENST00000523992 854 ntBASIC24.8■■□□□ 1.56
IFT140Q96RY7 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 AC009145.4-201ENST00000625119 1294 ntBASIC24.8■■□□□ 1.56
IFT140Q96RY7 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
IFT140Q96RY7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
IFT140Q96RY7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC24.79■■□□□ 1.56
IFT140Q96RY7 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC24.79■■□□□ 1.56
IFT140Q96RY7 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
IFT140Q96RY7 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC24.79■■□□□ 1.56
IFT140Q96RY7 RNA5SP417-201ENST00000516459 108 ntBASIC24.79■■□□□ 1.56
IFT140Q96RY7 AC002044.2-201ENST00000624910 970 ntBASIC24.79■■□□□ 1.56
IFT140Q96RY7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
IFT140Q96RY7 TNRC18P3-201ENST00000441896 2691 ntBASIC24.79■■□□□ 1.56
IFT140Q96RY7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC24.79■■□□□ 1.56
IFT140Q96RY7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
IFT140Q96RY7 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC24.78■■□□□ 1.56
IFT140Q96RY7 BX088702.1-201ENST00000610784 235 ntBASIC24.78■■□□□ 1.56
IFT140Q96RY7 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
IFT140Q96RY7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
IFT140Q96RY7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms