Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 FAM8A3P-201ENST00000427218 844 ntBASIC14.94□□□□□ -0.02
VMP1Q96GC9 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 RN7SL618P-201ENST00000477850 296 ntBASIC14.94□□□□□ -0.02
VMP1Q96GC9 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 AC092364.2-202ENST00000597012 1073 ntBASIC14.94□□□□□ -0.02
VMP1Q96GC9 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
VMP1Q96GC9 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.94□□□□□ -0.02
VMP1Q96GC9 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TMBIM7P-203ENST00000641617 1718 ntBASIC14.93□□□□□ -0.02
VMP1Q96GC9 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 MIR6069-201ENST00000620069 79 ntBASIC14.93□□□□□ -0.02
VMP1Q96GC9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 AC022144.1-201ENST00000602255 1580 ntBASIC14.93□□□□□ -0.02
VMP1Q96GC9 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
VMP1Q96GC9 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
VMP1Q96GC9 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms