Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM86LP-201ENST00000478302 853 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AC025048.3-201ENST00000590609 569 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AC005702.4-201ENST00000618393 416 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 REXO1L6P-201ENST00000603433 1515 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TARDBPP1-201ENST00000442013 1203 ntBASIC4.84□□□□□ -1.64
SYNE1Q8NF91 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 LIN28A-202ENST00000326279 4008 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SYNE1Q8NF91 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AL031595.1-201ENST00000623969 4709 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AP005482.1-201ENST00000563722 1273 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC036164.1-201ENST00000570544 333 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SRD5A3P1-201ENST00000603021 949 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FMNL1-202ENST00000331495 4101 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CDCA2-202ENST00000380665 3565 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AL353705.2-201ENST00000428243 662 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MIR5189-201ENST00000577370 114 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms