Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 MIR6842-201ENST00000612539 65 ntBASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
KRT28Q7Z3Y7 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AL627389.1-201ENST00000413508 1182 ntBASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 DNAJB1P1-201ENST00000429417 1024 ntBASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AC007718.1-201ENST00000621078 280 ntBASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 YRDCP1-201ENST00000621419 643 ntBASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AC051619.9-201ENST00000623237 597 ntBASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
KRT28Q7Z3Y7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 FAM58BP-201ENST00000439056 645 ntBASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 AC008805.1-201ENST00000590892 364 ntBASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 AP001065.2-201ENST00000617205 644 ntBASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT28Q7Z3Y7 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
KRT28Q7Z3Y7 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 PFN2-202ENST00000423691 911 ntTSL 2 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 AC132192.2-201ENST00000596206 1147 ntBASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 AC103810.10-201ENST00000606504 343 ntBASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms