Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
PDLIM3Q53GG5 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.98□□□□□ -0.33
PDLIM3Q53GG5 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
PDLIM3Q53GG5 AC136621.1-201ENST00000624017 2304 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AL592309.1-201ENST00000443127 649 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SPDYE11-202ENST00000450699 704 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 FAM86C2P-203ENST00000528684 1004 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SPDYE9P-201ENST00000570642 692 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 MIR4321-201ENST00000592276 80 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SPDYE10P-202ENST00000612005 668 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SPDYE8P-202ENST00000612377 668 ntBASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.97□□□□□ -0.33
PDLIM3Q53GG5 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 FAM45BP-202ENST00000592932 1624 ntBASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
PDLIM3Q53GG5 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms