Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
APOEP02649 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.29■□□□□ 0.2
APOEP02649 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 LINC02084-201ENST00000606069 1096 ntBASIC16.29■□□□□ 0.2
APOEP02649 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.29■□□□□ 0.2
APOEP02649 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOEP02649 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.29■□□□□ 0.2
APOEP02649 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.29■□□□□ 0.2
APOEP02649 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
APOEP02649 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.28■□□□□ 0.2
APOEP02649 AC104596.2-201ENST00000512793 793 ntBASIC16.28■□□□□ 0.2
APOEP02649 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 API5-211ENST00000534695 560 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.28■□□□□ 0.2
APOEP02649 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
APOEP02649 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.28■□□□□ 0.2
APOEP02649 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
APOEP02649 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
APOEP02649 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
APOEP02649 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.28■□□□□ 0.2
APOEP02649 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOEP02649 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.28■□□□□ 0.2
APOEP02649 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.27■□□□□ 0.2
APOEP02649 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.27■□□□□ 0.2
APOEP02649 AL035633.1-201ENST00000406139 838 ntBASIC16.27■□□□□ 0.2
APOEP02649 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.27■□□□□ 0.2
APOEP02649 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.27■□□□□ 0.2
APOEP02649 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.27■□□□□ 0.2
APOEP02649 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
APOEP02649 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 SPDYE22P-201ENST00000582158 798 ntBASIC16.27■□□□□ 0.2
APOEP02649 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.27■□□□□ 0.2
APOEP02649 AC093726.1-201ENST00000608064 963 ntBASIC16.27■□□□□ 0.2
APOEP02649 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.27■□□□□ 0.2
APOEP02649 AL662799.1-202ENST00000614205 422 ntBASIC16.27■□□□□ 0.2
APOEP02649 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
APOEP02649 AC007431.3-201ENST00000623221 587 ntBASIC16.27■□□□□ 0.2
APOEP02649 AL121723.1-201ENST00000445194 1519 ntBASIC16.27■□□□□ 0.2
APOEP02649 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.27■□□□□ 0.2
APOEP02649 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.27■□□□□ 0.2
APOEP02649 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOEP02649 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
APOEP02649 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms