Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CHMP2AO43633 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP2AO43633 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CHMP2AO43633 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CHMP2AO43633 AP001582.1-201ENST00000525856 295 ntBASIC17.42■□□□□ 0.38
CHMP2AO43633 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.42■□□□□ 0.38
CHMP2AO43633 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.42■□□□□ 0.38
CHMP2AO43633 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP2AO43633 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP2AO43633 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.42■□□□□ 0.38
CHMP2AO43633 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP2AO43633 CICP6-201ENST00000457191 2729 ntBASIC17.41■□□□□ 0.38
CHMP2AO43633 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHMP2AO43633 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC105917.1-201ENST00000506637 2539 ntBASIC17.41■□□□□ 0.38
CHMP2AO43633 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHMP2AO43633 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC17.41■□□□□ 0.38
CHMP2AO43633 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC007389.4-201ENST00000454674 793 ntBASIC17.41■□□□□ 0.38
CHMP2AO43633 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHMP2AO43633 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.41■□□□□ 0.38
CHMP2AO43633 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CHMP2AO43633 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.41■□□□□ 0.38
CHMP2AO43633 CICP11-201ENST00000434745 2827 ntBASIC17.41■□□□□ 0.38
CHMP2AO43633 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.41■□□□□ 0.38
CHMP2AO43633 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP2AO43633 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP2AO43633 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.4■□□□□ 0.38
CHMP2AO43633 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.4■□□□□ 0.38
CHMP2AO43633 TDH-203ENST00000531764 1110 ntBASIC17.4■□□□□ 0.38
CHMP2AO43633 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC005252.2-201ENST00000624630 1141 ntBASIC17.4■□□□□ 0.38
CHMP2AO43633 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.4■□□□□ 0.38
CHMP2AO43633 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHMP2AO43633 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP2AO43633 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms