Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 C2orf27AP3-201ENST00000434123 579 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 ACA64.2-201ENST00000459014 129 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AP005482.1-201ENST00000563722 1273 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AP003680.1-201ENST00000598970 3660 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 MIR6805-201ENST00000615055 62 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AL354718.3-201ENST00000616414 581 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 CR382287.1-201ENST00000623954 586 ntBASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CHMP4AQ9BY43 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 PRAL-201ENST00000624952 3286 ntBASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 AC016694.1-201ENST00000434179 700 ntBASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 AC079316.1-201ENST00000548397 411 ntBASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 KRT8P35-201ENST00000483942 1338 ntBASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP4AQ9BY43 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.74
CHMP4AQ9BY43 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC092933.1-201ENST00000393644 945 ntBASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC079776.1-201ENST00000401540 1152 ntBASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC112492.5-201ENST00000421897 457 ntBASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC244107.1-201ENST00000442033 332 ntBASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 ATP5G2P4-201ENST00000442175 420 ntBASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP4AQ9BY43 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 KLF2P2-201ENST00000416807 1039 ntBASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 TMEM14DP-201ENST00000422205 345 ntBASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP4AQ9BY43 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms