Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.06■□□□□ 0
LMX1AQ8TE12 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
LMX1AQ8TE12 CYP2T1P-202ENST00000641596 2535 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 LRRC59-203ENST00000576448 1531 ntBASIC15.06■□□□□ 0
LMX1AQ8TE12 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LMX1AQ8TE12 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LMX1AQ8TE12 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
LMX1AQ8TE12 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ 0
LMX1AQ8TE12 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
LMX1AQ8TE12 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 AC010491.1-201ENST00000563101 2797 ntBASIC15.05■□□□□ 0
LMX1AQ8TE12 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.05■□□□□ 0
LMX1AQ8TE12 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
LMX1AQ8TE12 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LMX1AQ8TE12 MIR326-201ENST00000362220 95 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC099548.2-209ENST00000480264 625 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.05■□□□□ -0
LMX1AQ8TE12 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.05■□□□□ -0
LMX1AQ8TE12 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.05■□□□□ -0
LMX1AQ8TE12 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC244093.1-201ENST00000610837 814 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC020907.1-201ENST00000616460 1350 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
LMX1AQ8TE12 AL133338.1-201ENST00000565695 1517 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 AC084364.1-201ENST00000551967 1556 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
LMX1AQ8TE12 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.05■□□□□ -0
LMX1AQ8TE12 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.05■□□□□ -0
LMX1AQ8TE12 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 AC127383.1-201ENST00000444697 1800 ntBASIC15.05■□□□□ -0
LMX1AQ8TE12 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
LMX1AQ8TE12 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
LMX1AQ8TE12 PKD1P5-201ENST00000532415 10291 ntBASIC15.04■□□□□ -0
LMX1AQ8TE12 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 AC148477.4-201ENST00000613430 1793 ntBASIC15.04■□□□□ -0
LMX1AQ8TE12 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
LMX1AQ8TE12 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.04■□□□□ -0
LMX1AQ8TE12 TPM3P8-201ENST00000330554 643 ntBASIC15.04■□□□□ -0
LMX1AQ8TE12 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
LMX1AQ8TE12 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.04■□□□□ -0
LMX1AQ8TE12 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms