Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.88■■□□□ 1.57
CDX2Q99626 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.88■■□□□ 1.57
CDX2Q99626 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.88■■□□□ 1.57
CDX2Q99626 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.88■■□□□ 1.57
CDX2Q99626 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CDX2Q99626 GRAMD4P2-201ENST00000423297 1097 ntBASIC24.88■■□□□ 1.57
CDX2Q99626 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.88■■□□□ 1.57
CDX2Q99626 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.88■■□□□ 1.57
CDX2Q99626 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CDX2Q99626 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.87■■□□□ 1.57
CDX2Q99626 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.87■■□□□ 1.57
CDX2Q99626 AC233992.3-201ENST00000607491 485 ntBASIC24.87■■□□□ 1.57
CDX2Q99626 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
CDX2Q99626 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
CDX2Q99626 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.86■■□□□ 1.57
CDX2Q99626 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CDX2Q99626 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.86■■□□□ 1.57
CDX2Q99626 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.86■■□□□ 1.57
CDX2Q99626 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.86■■□□□ 1.57
CDX2Q99626 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.86■■□□□ 1.57
CDX2Q99626 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC24.85■■□□□ 1.57
CDX2Q99626 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
CDX2Q99626 AC066615.1-201ENST00000640911 628 ntBASIC24.85■■□□□ 1.57
CDX2Q99626 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CDX2Q99626 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CDX2Q99626 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.85■■□□□ 1.57
CDX2Q99626 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC24.84■■□□□ 1.57
CDX2Q99626 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.84■■□□□ 1.57
CDX2Q99626 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.84■■□□□ 1.57
CDX2Q99626 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CDX2Q99626 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.83■■□□□ 1.57
CDX2Q99626 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.83■■□□□ 1.57
CDX2Q99626 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CDX2Q99626 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.83■■□□□ 1.57
CDX2Q99626 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.83■■□□□ 1.57
CDX2Q99626 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.83■■□□□ 1.57
CDX2Q99626 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.83■■□□□ 1.57
CDX2Q99626 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.83■■□□□ 1.57
CDX2Q99626 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CDX2Q99626 AC005703.6-201ENST00000623265 1329 ntBASIC24.83■■□□□ 1.56
CDX2Q99626 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
CDX2Q99626 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.82■■□□□ 1.56
CDX2Q99626 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CDX2Q99626 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDX2Q99626 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.82■■□□□ 1.56
CDX2Q99626 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC24.82■■□□□ 1.56
CDX2Q99626 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDX2Q99626 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDX2Q99626 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
CDX2Q99626 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.82■■□□□ 1.56
CDX2Q99626 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CDX2Q99626 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CDX2Q99626 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.81■■□□□ 1.56
CDX2Q99626 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CDX2Q99626 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
CDX2Q99626 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.81■■□□□ 1.56
CDX2Q99626 AC245100.8-202ENST00000629247 1058 ntBASIC24.81■■□□□ 1.56
CDX2Q99626 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CDX2Q99626 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDX2Q99626 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
CDX2Q99626 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.8■■□□□ 1.56
CDX2Q99626 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.8■■□□□ 1.56
CDX2Q99626 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.8■■□□□ 1.56
CDX2Q99626 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CDX2Q99626 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.8■■□□□ 1.56
CDX2Q99626 AC136469.2-201ENST00000623944 1028 ntBASIC24.8■■□□□ 1.56
CDX2Q99626 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CDX2Q99626 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
CDX2Q99626 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDX2Q99626 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CDX2Q99626 BX842568.3-201ENST00000418104 571 ntBASIC24.79■■□□□ 1.56
CDX2Q99626 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.79■■□□□ 1.56
CDX2Q99626 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.79■■□□□ 1.56
CDX2Q99626 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC24.79■■□□□ 1.56
CDX2Q99626 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CDX2Q99626 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.79■■□□□ 1.56
CDX2Q99626 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CDX2Q99626 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CDX2Q99626 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CDX2Q99626 AC123595.1-201ENST00000440769 1046 ntBASIC24.78■■□□□ 1.56
CDX2Q99626 NTF6G-201ENST00000591094 616 ntBASIC24.78■■□□□ 1.56
CDX2Q99626 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.78■■□□□ 1.56
CDX2Q99626 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC24.78■■□□□ 1.56
CDX2Q99626 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.78■■□□□ 1.56
CDX2Q99626 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CDX2Q99626 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CDX2Q99626 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CDX2Q99626 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC24.77■■□□□ 1.56
CDX2Q99626 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CDX2Q99626 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.77■■□□□ 1.56
CDX2Q99626 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CDX2Q99626 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.77■■□□□ 1.56
CDX2Q99626 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CDX2Q99626 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CDX2Q99626 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms