Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HTTP42858 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
HTTP42858 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.6■■□□□ 1.85
HTTP42858 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
HTTP42858 MIR6722-201ENST00000617286 78 ntBASIC26.6■■□□□ 1.85
HTTP42858 SERBP1P1-201ENST00000396021 1160 ntBASIC26.59■■□□□ 1.85
HTTP42858 YBX1P1-201ENST00000445822 960 ntBASIC26.59■■□□□ 1.85
HTTP42858 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.59■■□□□ 1.85
HTTP42858 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC26.59■■□□□ 1.85
HTTP42858 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC26.59■■□□□ 1.85
HTTP42858 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HTTP42858 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HTTP42858 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.58■■□□□ 1.85
HTTP42858 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.58■■□□□ 1.85
HTTP42858 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.58■■□□□ 1.85
HTTP42858 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HTTP42858 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC26.57■■□□□ 1.84
HTTP42858 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.57■■□□□ 1.84
HTTP42858 HLA-L-209ENST00000420110 1011 ntBASIC26.57■■□□□ 1.84
HTTP42858 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.57■■□□□ 1.84
HTTP42858 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
HTTP42858 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC26.56■■□□□ 1.84
HTTP42858 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC26.56■■□□□ 1.84
HTTP42858 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HTTP42858 AC099791.1-201ENST00000416440 715 ntBASIC26.55■■□□□ 1.84
HTTP42858 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC26.55■■□□□ 1.84
HTTP42858 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC26.55■■□□□ 1.84
HTTP42858 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.55■■□□□ 1.84
HTTP42858 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.55■■□□□ 1.84
HTTP42858 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
HTTP42858 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC26.54■■□□□ 1.84
HTTP42858 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HTTP42858 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
HTTP42858 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.54■■□□□ 1.84
HTTP42858 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 DUX4L2-201ENST00000561772 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC26.53■■□□□ 1.84
HTTP42858 DUX4L6-201ENST00000626483 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 DUX4L1-201ENST00000627662 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 DUX4L8-201ENST00000629013 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 DUX4L3-201ENST00000630187 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 DUX4L7-201ENST00000630678 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 DUX4L5-201ENST00000630834 1275 ntBASIC26.53■■□□□ 1.84
HTTP42858 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.53■■□□□ 1.84
HTTP42858 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HTTP42858 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.53■■□□□ 1.84
HTTP42858 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
HTTP42858 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.52■■□□□ 1.84
HTTP42858 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.52■■□□□ 1.84
HTTP42858 ABHD17AP1-201ENST00000358206 933 ntBASIC26.52■■□□□ 1.84
HTTP42858 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HTTP42858 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
HTTP42858 RAP2CP1-201ENST00000605103 478 ntBASIC26.52■■□□□ 1.84
HTTP42858 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.52■■□□□ 1.84
HTTP42858 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HTTP42858 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HTTP42858 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HTTP42858 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HTTP42858 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC26.5■■□□□ 1.83
HTTP42858 AK1-201ENST00000223836 736 ntTSL 3 BASIC26.49■■□□□ 1.83
HTTP42858 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HTTP42858 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.49■■□□□ 1.83
HTTP42858 AC011298.3-201ENST00000615796 283 ntBASIC26.49■■□□□ 1.83
HTTP42858 AC004911.1-201ENST00000416316 871 ntBASIC26.49■■□□□ 1.83
HTTP42858 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HTTP42858 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HTTP42858 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.48■■□□□ 1.83
HTTP42858 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
HTTP42858 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.48■■□□□ 1.83
HTTP42858 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
HTTP42858 AC004448.1-201ENST00000458332 883 ntBASIC26.48■■□□□ 1.83
HTTP42858 AC008764.7-201ENST00000593779 1081 ntBASIC26.48■■□□□ 1.83
HTTP42858 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HTTP42858 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
HTTP42858 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.47■■□□□ 1.83
HTTP42858 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
HTTP42858 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms