Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 GAPDHP21-201ENST00000450301 1010 ntBASIC14.39□□□□□ -0.11
RNF4P78317 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.39□□□□□ -0.11
RNF4P78317 AC026410.3-201ENST00000514280 936 ntBASIC14.39□□□□□ -0.11
RNF4P78317 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.39□□□□□ -0.11
RNF4P78317 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
RNF4P78317 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.39□□□□□ -0.11
RNF4P78317 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.39□□□□□ -0.11
RNF4P78317 AC120045.2-201ENST00000567334 178 ntBASIC14.39□□□□□ -0.11
RNF4P78317 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.39□□□□□ -0.11
RNF4P78317 AC025181.2-201ENST00000606994 802 ntBASIC14.39□□□□□ -0.11
RNF4P78317 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 AC020658.6-201ENST00000623564 1870 ntBASIC14.39□□□□□ -0.11
RNF4P78317 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.39□□□□□ -0.11
RNF4P78317 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.39□□□□□ -0.11
RNF4P78317 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RNF4P78317 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.38□□□□□ -0.11
RNF4P78317 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
RNF4P78317 C1QBPP1-201ENST00000400117 770 ntBASIC14.38□□□□□ -0.11
RNF4P78317 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 KRT17P7-201ENST00000451704 1104 ntBASIC14.38□□□□□ -0.11
RNF4P78317 INE1-201ENST00000456273 945 ntBASIC14.38□□□□□ -0.11
RNF4P78317 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 AC124283.3-201ENST00000570869 594 ntBASIC14.38□□□□□ -0.11
RNF4P78317 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.38□□□□□ -0.11
RNF4P78317 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 AL035252.4-201ENST00000624174 288 ntBASIC14.38□□□□□ -0.11
RNF4P78317 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 KRT8P22-201ENST00000562317 1415 ntBASIC14.38□□□□□ -0.11
RNF4P78317 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
RNF4P78317 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 AC063926.2-201ENST00000623766 1308 ntBASIC14.38□□□□□ -0.11
RNF4P78317 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
RNF4P78317 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
RNF4P78317 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms