Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PKNOX1P55347 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 AC148477.4-201ENST00000613430 1793 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 ELL2P1-201ENST00000413990 1906 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 MIR574-201ENST00000385209 96 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 AZGP1P1-201ENST00000411909 902 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.31■□□□□ 0.04
PKNOX1P55347 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.31■□□□□ 0.04
PKNOX1P55347 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.31■□□□□ 0.04
PKNOX1P55347 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 AL607033.1-201ENST00000623900 1599 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.31■□□□□ 0.04
PKNOX1P55347 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.31■□□□□ 0.04
PKNOX1P55347 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PKNOX1P55347 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.31■□□□□ 0.04
PKNOX1P55347 FGD5P1-202ENST00000614866 2498 ntBASIC15.31■□□□□ 0.04
PKNOX1P55347 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 OR2I1P-209ENST00000641730 5365 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.3■□□□□ 0.04
PKNOX1P55347 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PKNOX1P55347 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.3■□□□□ 0.04
PKNOX1P55347 RPL5P21-201ENST00000404620 815 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 AC005237.2-201ENST00000434368 219 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 ALG1L5P-201ENST00000482043 771 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 POLD2P1-201ENST00000511220 997 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 ALG1L8P-201ENST00000533887 760 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PKNOX1P55347 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 AC022145.2-201ENST00000598203 171 ntBASIC15.3■□□□□ 0.04
PKNOX1P55347 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PKNOX1P55347 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PKNOX1P55347 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms