Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 ELL2P1-201ENST00000413990 1906 ntBASIC18.24■□□□□ 0.51
MRE11P49959 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 AL139400.1-201ENST00000366220 510 ntBASIC18.24■□□□□ 0.51
MRE11P49959 MRPL20P1-201ENST00000400819 433 ntBASIC18.24■□□□□ 0.51
MRE11P49959 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.24■□□□□ 0.51
MRE11P49959 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.24■□□□□ 0.51
MRE11P49959 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.24■□□□□ 0.51
MRE11P49959 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.24■□□□□ 0.51
MRE11P49959 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.24■□□□□ 0.51
MRE11P49959 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.24■□□□□ 0.51
MRE11P49959 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
MRE11P49959 AP002414.3-201ENST00000589352 1468 ntBASIC18.24■□□□□ 0.51
MRE11P49959 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MRE11P49959 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MRE11P49959 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 SPDYE21P-201ENST00000413323 827 ntBASIC18.23■□□□□ 0.51
MRE11P49959 ELK2BP-201ENST00000415014 1224 ntBASIC18.23■□□□□ 0.51
MRE11P49959 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.23■□□□□ 0.51
MRE11P49959 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 AL513190.1-201ENST00000621254 727 ntBASIC18.23■□□□□ 0.51
MRE11P49959 REXO1L3P-201ENST00000622202 1288 ntBASIC18.23■□□□□ 0.51
MRE11P49959 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
MRE11P49959 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.23■□□□□ 0.51
MRE11P49959 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MRE11P49959 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC18.23■□□□□ 0.51
MRE11P49959 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.22■□□□□ 0.51
MRE11P49959 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MRE11P49959 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC18.22■□□□□ 0.51
MRE11P49959 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MRE11P49959 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.22■□□□□ 0.51
MRE11P49959 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MRE11P49959 PMS2P4-201ENST00000412466 1052 ntBASIC18.22■□□□□ 0.51
MRE11P49959 MKNK2P1-201ENST00000437526 628 ntBASIC18.22■□□□□ 0.51
MRE11P49959 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.22■□□□□ 0.51
MRE11P49959 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms