Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC002472.4-201ENST00000641915 272 ntBASIC16.98■□□□□ 0.31
HTTP42858 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HTTP42858 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.98■□□□□ 0.31
HTTP42858 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HTTP42858 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.97■□□□□ 0.31
HTTP42858 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 AL008718.2-201ENST00000609206 1313 ntBASIC16.97■□□□□ 0.31
HTTP42858 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HTTP42858 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC16.97■□□□□ 0.31
HTTP42858 AC024293.1-201ENST00000467930 498 ntBASIC16.97■□□□□ 0.31
HTTP42858 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.97■□□□□ 0.31
HTTP42858 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.97■□□□□ 0.31
HTTP42858 AC018695.6-201ENST00000614011 534 ntBASIC16.97■□□□□ 0.31
HTTP42858 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.97■□□□□ 0.31
HTTP42858 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HTTP42858 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 CICP11-201ENST00000434745 2827 ntBASIC16.96■□□□□ 0.31
HTTP42858 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HTTP42858 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.96■□□□□ 0.31
HTTP42858 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 AQP7P5-201ENST00000428759 1049 ntBASIC16.96■□□□□ 0.31
HTTP42858 AQP7P4-201ENST00000447083 1042 ntBASIC16.96■□□□□ 0.31
HTTP42858 AQP7P2-201ENST00000453967 1041 ntBASIC16.96■□□□□ 0.31
HTTP42858 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 AC011247.3-201ENST00000603297 438 ntBASIC16.96■□□□□ 0.31
HTTP42858 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 AQP7P3-201ENST00000624547 1041 ntBASIC16.96■□□□□ 0.31
HTTP42858 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.96■□□□□ 0.31
HTTP42858 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.96■□□□□ 0.31
HTTP42858 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
HTTP42858 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.96■□□□□ 0.31
HTTP42858 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
HTTP42858 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.96■□□□□ 0.31
HTTP42858 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HTTP42858 HIST2H2BA-201ENST00000412169 381 ntBASIC16.96■□□□□ 0.31
HTTP42858 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.96■□□□□ 0.31
HTTP42858 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.96■□□□□ 0.31
HTTP42858 LINC00431-202ENST00000636375 159 ntBASIC16.96■□□□□ 0.31
HTTP42858 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HTTP42858 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.96■□□□□ 0.3
HTTP42858 AC010491.1-201ENST00000563101 2797 ntBASIC16.96■□□□□ 0.3
HTTP42858 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HTTP42858 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.96■□□□□ 0.3
HTTP42858 AC124067.4-201ENST00000519691 2379 ntBASIC16.96■□□□□ 0.3
HTTP42858 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 MRPL37P1-201ENST00000592451 1337 ntBASIC16.95■□□□□ 0.3
HTTP42858 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC16.95■□□□□ 0.3
HTTP42858 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.95■□□□□ 0.3
HTTP42858 CR383656.3-201ENST00000551315 183 ntBASIC16.95■□□□□ 0.3
HTTP42858 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC16.95■□□□□ 0.3
HTTP42858 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.95■□□□□ 0.3
HTTP42858 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.95■□□□□ 0.3
HTTP42858 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HTTP42858 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC16.95■□□□□ 0.3
HTTP42858 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HTTP42858 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.95■□□□□ 0.3
HTTP42858 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.95■□□□□ 0.3
HTTP42858 AC005962.1-201ENST00000584100 773 ntBASIC16.95■□□□□ 0.3
HTTP42858 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms