Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 RPSAP15-201ENST00000448168 861 ntBASIC17.85■□□□□ 0.45
SCN4AP35499 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC17.85■□□□□ 0.45
SCN4AP35499 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.85■□□□□ 0.45
SCN4AP35499 SIGLEC18P-201ENST00000602271 909 ntBASIC17.85■□□□□ 0.45
SCN4AP35499 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.85■□□□□ 0.45
SCN4AP35499 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC17.85■□□□□ 0.45
SCN4AP35499 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SCN4AP35499 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SCN4AP35499 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SCN4AP35499 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
SCN4AP35499 AC018629.1-201ENST00000623381 1736 ntBASIC17.85■□□□□ 0.45
SCN4AP35499 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN4AP35499 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SCN4AP35499 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 RPL5P21-201ENST00000404620 815 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN4AP35499 LINC00634-202ENST00000505157 222 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 CR383656.3-201ENST00000551315 183 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN4AP35499 MIR6720-201ENST00000611664 98 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SCN4AP35499 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC17.84■□□□□ 0.45
SCN4AP35499 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 RN7SKP230-201ENST00000365642 335 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 COX20P1-201ENST00000366529 357 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN4AP35499 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN4AP35499 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC17.84■□□□□ 0.45
SCN4AP35499 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN4AP35499 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN4AP35499 AC006158.1-201ENST00000610661 249 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN4AP35499 LINC00431-202ENST00000636375 159 ntBASIC17.84■□□□□ 0.45
SCN4AP35499 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN4AP35499 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.83■□□□□ 0.45
SCN4AP35499 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.83■□□□□ 0.45
SCN4AP35499 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCN4AP35499 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN4AP35499 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN4AP35499 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.83■□□□□ 0.44
SCN4AP35499 AL645933.1-201ENST00000440087 609 ntBASIC17.83■□□□□ 0.44
SCN4AP35499 AL354861.1-201ENST00000445213 355 ntBASIC17.83■□□□□ 0.44
SCN4AP35499 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.83■□□□□ 0.44
SCN4AP35499 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.83■□□□□ 0.44
SCN4AP35499 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN4AP35499 AP003398.1-201ENST00000531124 318 ntBASIC17.83■□□□□ 0.44
SCN4AP35499 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC17.83■□□□□ 0.44
SCN4AP35499 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC17.83■□□□□ 0.44
SCN4AP35499 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.83■□□□□ 0.44
SCN4AP35499 AC133540.1-201ENST00000620845 1019 ntBASIC17.83■□□□□ 0.44
SCN4AP35499 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
SCN4AP35499 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN4AP35499 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN4AP35499 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.83■□□□□ 0.44
SCN4AP35499 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN4AP35499 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN4AP35499 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms