Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 AC022748.3-201ENST00000621828 275 ntBASIC20.3■□□□□ 0.84
HOXC9P31274 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXC9P31274 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC20.3■□□□□ 0.84
HOXC9P31274 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.3■□□□□ 0.84
HOXC9P31274 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.3■□□□□ 0.84
HOXC9P31274 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
HOXC9P31274 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
HOXC9P31274 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
HOXC9P31274 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
HOXC9P31274 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
HOXC9P31274 AL662890.1-201ENST00000396818 632 ntBASIC20.29■□□□□ 0.84
HOXC9P31274 KRTAP19-9P-201ENST00000421795 191 ntBASIC20.29■□□□□ 0.84
HOXC9P31274 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC20.29■□□□□ 0.84
HOXC9P31274 EIF4HP1-201ENST00000453115 687 ntBASIC20.29■□□□□ 0.84
HOXC9P31274 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
HOXC9P31274 DIO1-215ENST00000610607 796 ntTSL 5 BASIC20.29■□□□□ 0.84
HOXC9P31274 AC138627.1-207ENST00000641560 1006 ntBASIC20.29■□□□□ 0.84
HOXC9P31274 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
HOXC9P31274 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXC9P31274 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.29■□□□□ 0.84
HOXC9P31274 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 CYP46A4P-201ENST00000414953 267 ntBASIC20.28■□□□□ 0.84
HOXC9P31274 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC20.28■□□□□ 0.84
HOXC9P31274 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXC9P31274 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 MIR4683-201ENST00000579659 81 ntBASIC20.28■□□□□ 0.84
HOXC9P31274 MIR4783-201ENST00000580343 82 ntBASIC20.28■□□□□ 0.84
HOXC9P31274 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 AC138649.2-201ENST00000615886 705 ntBASIC20.28■□□□□ 0.84
HOXC9P31274 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXC9P31274 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXC9P31274 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
HOXC9P31274 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HOXC9P31274 AL118508.1-201ENST00000613502 2345 ntBASIC20.27■□□□□ 0.84
HOXC9P31274 CICP11-201ENST00000434745 2827 ntBASIC20.27■□□□□ 0.84
HOXC9P31274 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HOXC9P31274 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HOXC9P31274 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.27■□□□□ 0.84
HOXC9P31274 SPTLC1P5-201ENST00000450718 252 ntBASIC20.27■□□□□ 0.84
HOXC9P31274 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC9P31274 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC9P31274 SDHD-202ENST00000525291 790 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC9P31274 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC9P31274 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXC9P31274 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXC9P31274 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXC9P31274 AP005117.1-202ENST00000581724 1908 ntBASIC20.27■□□□□ 0.84
HOXC9P31274 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
HOXC9P31274 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC9P31274 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC9P31274 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC9P31274 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms