Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLIP3Q96DZ5 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 GK-202ENST00000378941 458 ntTSL 3 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 DGCR5-201ENST00000399539 862 ntBASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 HAUS4P1-201ENST00000406739 1145 ntBASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 HIST3H2BA-201ENST00000436555 524 ntBASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AL589987.1-201ENST00000453380 819 ntBASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 CHCHD2P3-201ENST00000603038 451 ntBASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CLIP3Q96DZ5 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 AZGP1P1-201ENST00000411909 902 ntBASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 RN7SL752P-201ENST00000463779 287 ntBASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 BNIP3P1-202ENST00000550043 1585 ntBASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CLIP3Q96DZ5 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms