Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 RN7SKP175-201ENST00000408472 289 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AC026434.2-201ENST00000506094 1078 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 NEU3-205ENST00000531619 582 ntTSL 5 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AC135983.4-201ENST00000564116 1262 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AL132994.2-201ENST00000603120 687 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 AC087045.2-201ENST00000606279 1003 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 E2F3P2-201ENST00000447755 1422 ntBASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
KRT28Q7Z3Y7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 REXO1L5P-201ENST00000622260 2098 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 RPSAP31-201ENST00000416648 895 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 RN7SL818P-201ENST00000485099 259 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 PGAM1P5-201ENST00000548011 764 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 MIR4754-201ENST00000582477 89 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 RN7SL725P-201ENST00000606439 259 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AC002472.3-201ENST00000640124 621 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 AL805961.1-201ENST00000642026 753 ntBASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
KRT28Q7Z3Y7 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC090857.1-201ENST00000527400 390 ntBASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 DUX4L46-201ENST00000566845 751 ntBASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC092171.5-201ENST00000608012 942 ntBASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms