Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.03□□□□□ -0.32
PDLIM3Q53GG5 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
PDLIM3Q53GG5 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AC112191.1-201ENST00000523689 701 ntBASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AC010336.2-201ENST00000564226 506 ntBASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AP001059.3-201ENST00000619053 235 ntBASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AC006486.2-201ENST00000624246 2199 ntBASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.02□□□□□ -0.33
PDLIM3Q53GG5 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 LINC02228-204ENST00000642115 2962 ntBASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC109635.5-201ENST00000533593 962 ntBASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 MIR4525-201ENST00000580000 75 ntBASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.01□□□□□ -0.33
PDLIM3Q53GG5 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms