Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 AC236430.1-201ENST00000402231 743 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
LIM2P55344 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.78□□□□□ -0.04
LIM2P55344 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.78□□□□□ -0.04
LIM2P55344 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.78□□□□□ -0.04
LIM2P55344 AC023310.3-201ENST00000557027 670 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AC100756.1-201ENST00000562736 682 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AC138749.3-201ENST00000567691 622 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 MIR4745-201ENST00000577608 62 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AL391069.4-201ENST00000609583 481 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AC116165.1-201ENST00000611806 668 ntBASIC14.78□□□□□ -0.04
LIM2P55344 AC008761.3-201ENST00000624803 892 ntBASIC14.78□□□□□ -0.04
LIM2P55344 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.78□□□□□ -0.04
LIM2P55344 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LIM2P55344 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.78□□□□□ -0.04
LIM2P55344 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LIM2P55344 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.78□□□□□ -0.04
LIM2P55344 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.77□□□□□ -0.04
LIM2P55344 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 AC084364.1-201ENST00000551967 1556 ntBASIC14.77□□□□□ -0.04
LIM2P55344 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.77□□□□□ -0.04
LIM2P55344 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.77□□□□□ -0.04
LIM2P55344 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
LIM2P55344 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.77□□□□□ -0.04
LIM2P55344 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.77□□□□□ -0.04
LIM2P55344 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.77□□□□□ -0.04
LIM2P55344 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LIM2P55344 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.77□□□□□ -0.05
LIM2P55344 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.77□□□□□ -0.05
LIM2P55344 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.77□□□□□ -0.05
LIM2P55344 AC002472.2-201ENST00000442739 958 ntBASIC14.77□□□□□ -0.05
LIM2P55344 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
LIM2P55344 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.77□□□□□ -0.05
LIM2P55344 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.77□□□□□ -0.05
LIM2P55344 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.05
LIM2P55344 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.77□□□□□ -0.05
LIM2P55344 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.77□□□□□ -0.05
LIM2P55344 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 AC091951.1-201ENST00000512854 2465 ntBASIC14.77□□□□□ -0.05
LIM2P55344 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
LIM2P55344 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LIM2P55344 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
LIM2P55344 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 C18orf15-201ENST00000623680 2534 ntBASIC14.76□□□□□ -0.05
LIM2P55344 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms