Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 MIR4683-201ENST00000579659 81 ntBASIC21.18■□□□□ 0.98
MSH6P52701 AC007881.3-201ENST00000608897 607 ntBASIC21.18■□□□□ 0.98
MSH6P52701 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
MSH6P52701 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
MSH6P52701 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH6P52701 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 AC011477.6-201ENST00000604980 1927 ntBASIC21.17■□□□□ 0.98
MSH6P52701 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH6P52701 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 AP000356.3-201ENST00000382243 753 ntBASIC21.17■□□□□ 0.98
MSH6P52701 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH6P52701 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC21.17■□□□□ 0.98
MSH6P52701 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 MESTP3-201ENST00000503460 968 ntBASIC21.17■□□□□ 0.98
MSH6P52701 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 MIR4313-201ENST00000580760 101 ntBASIC21.17■□□□□ 0.98
MSH6P52701 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH6P52701 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH6P52701 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 AC022188.1-201ENST00000620960 1664 ntBASIC21.17■□□□□ 0.98
MSH6P52701 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH6P52701 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
MSH6P52701 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MSH6P52701 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH6P52701 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
MSH6P52701 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 IDS-203ENST00000428056 1213 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH6P52701 RN7SL67P-201ENST00000492147 296 ntBASIC21.16■□□□□ 0.98
MSH6P52701 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH6P52701 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH6P52701 POU5F1P2-201ENST00000521750 823 ntBASIC21.16■□□□□ 0.98
MSH6P52701 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC21.16■□□□□ 0.98
MSH6P52701 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 FOS-204ENST00000554617 796 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC21.16■□□□□ 0.98
MSH6P52701 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC21.16■□□□□ 0.98
MSH6P52701 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
MSH6P52701 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH6P52701 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
MSH6P52701 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MSH6P52701 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
MSH6P52701 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH6P52701 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.15■□□□□ 0.98
MSH6P52701 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC21.15■□□□□ 0.98
MSH6P52701 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
MSH6P52701 PIN4P1-201ENST00000451079 396 ntBASIC21.15■□□□□ 0.98
MSH6P52701 PFN2-206ENST00000461930 606 ntTSL 4 BASIC21.15■□□□□ 0.98
MSH6P52701 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC21.15■□□□□ 0.98
MSH6P52701 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH6P52701 TPM1-223ENST00000560445 485 ntTSL 3 BASIC21.15■□□□□ 0.98
MSH6P52701 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH6P52701 AC007718.1-201ENST00000621078 280 ntBASIC21.15■□□□□ 0.98
MSH6P52701 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC21.15■□□□□ 0.98
MSH6P52701 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms