Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC21.31■■□□□ 1
NPHP4O75161 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC21.31■■□□□ 1
NPHP4O75161 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 AC008825.2-201ENST00000603374 718 ntBASIC21.31■■□□□ 1
NPHP4O75161 AC006158.1-201ENST00000610661 249 ntBASIC21.31■■□□□ 1
NPHP4O75161 AC015909.3-201ENST00000572855 1794 ntBASIC21.31■■□□□ 1
NPHP4O75161 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 REXO1L5P-201ENST00000622260 2098 ntBASIC21.31■■□□□ 1
NPHP4O75161 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
NPHP4O75161 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NPHP4O75161 LINC01165-201ENST00000445190 1623 ntBASIC21.31■■□□□ 1
NPHP4O75161 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.31■■□□□ 1
NPHP4O75161 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.31■■□□□ 1
NPHP4O75161 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC21.3■■□□□ 1
NPHP4O75161 HCG27-204ENST00000424675 895 ntTSL 3 BASIC21.3■■□□□ 1
NPHP4O75161 DUTP3-201ENST00000450025 415 ntBASIC21.3■■□□□ 1
NPHP4O75161 AC024293.1-201ENST00000467930 498 ntBASIC21.3■■□□□ 1
NPHP4O75161 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC21.3■■□□□ 1
NPHP4O75161 AC006122.1-201ENST00000493323 440 ntBASIC21.3■■□□□ 1
NPHP4O75161 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
NPHP4O75161 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC21.3■■□□□ 1
NPHP4O75161 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC21.3■■□□□ 1
NPHP4O75161 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NPHP4O75161 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC21.3■■□□□ 1
NPHP4O75161 SIGLEC18P-201ENST00000602271 909 ntBASIC21.3■■□□□ 1
NPHP4O75161 AC138466.5-201ENST00000624002 808 ntBASIC21.3■■□□□ 1
NPHP4O75161 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC21.3■■□□□ 1
NPHP4O75161 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC21.3■■□□□ 1
NPHP4O75161 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC21.3■■□□□ 1
NPHP4O75161 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC21.3■■□□□ 1
NPHP4O75161 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC21.29■■□□□ 1
NPHP4O75161 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC21.29■■□□□ 1
NPHP4O75161 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC21.29■■□□□ 1
NPHP4O75161 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC21.29■■□□□ 1
NPHP4O75161 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC21.29■■□□□ 1
NPHP4O75161 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 AC011247.3-201ENST00000603297 438 ntBASIC21.29■■□□□ 1
NPHP4O75161 AC005041.3-201ENST00000606287 649 ntBASIC21.29■■□□□ 1
NPHP4O75161 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
NPHP4O75161 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.29■■□□□ 1
NPHP4O75161 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
NPHP4O75161 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
NPHP4O75161 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 BAK1P1-201ENST00000317045 636 ntBASIC21.29■■□□□ 1
NPHP4O75161 MBP-201ENST00000354542 575 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 AC004837.1-201ENST00000446267 564 ntBASIC21.29■■□□□ 1
NPHP4O75161 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC21.29■■□□□ 1
NPHP4O75161 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC21.29■■□□□ 1
NPHP4O75161 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NPHP4O75161 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
NPHP4O75161 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.28■■□□□ 1
NPHP4O75161 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.28■■□□□ 1
NPHP4O75161 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 AC020910.5-201ENST00000623668 1865 ntBASIC21.28■■□□□ 1
NPHP4O75161 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
NPHP4O75161 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
NPHP4O75161 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC21.28■■□□□ 1
NPHP4O75161 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC21.28■■□□□ 1
NPHP4O75161 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms