Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MSH4O15457 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.38■□□□□ 0.37
MSH4O15457 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 AC004066.1-201ENST00000502488 802 ntBASIC17.38■□□□□ 0.37
MSH4O15457 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.38■□□□□ 0.37
MSH4O15457 SAMD11P1-201ENST00000571429 661 ntBASIC17.38■□□□□ 0.37
MSH4O15457 BX539320.1-201ENST00000623759 877 ntBASIC17.38■□□□□ 0.37
MSH4O15457 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MSH4O15457 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.38■□□□□ 0.37
MSH4O15457 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MSH4O15457 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.38■□□□□ 0.37
MSH4O15457 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 ACKR1-201ENST00000368121 1240 ntBASIC17.37■□□□□ 0.37
MSH4O15457 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 SLC25A47P1-201ENST00000531577 414 ntBASIC17.37■□□□□ 0.37
MSH4O15457 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 AC009486.1-201ENST00000569860 813 ntBASIC17.37■□□□□ 0.37
MSH4O15457 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.37■□□□□ 0.37
MSH4O15457 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.37■□□□□ 0.37
MSH4O15457 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
MSH4O15457 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
MSH4O15457 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.36■□□□□ 0.37
MSH4O15457 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
MSH4O15457 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
MSH4O15457 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 BAATP1-201ENST00000412284 1225 ntBASIC17.36■□□□□ 0.37
MSH4O15457 GHSR-202ENST00000427970 912 ntBASIC17.36■□□□□ 0.37
MSH4O15457 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.36■□□□□ 0.37
MSH4O15457 AC022137.2-201ENST00000503482 481 ntBASIC17.36■□□□□ 0.37
MSH4O15457 AP001889.1-201ENST00000525414 633 ntBASIC17.36■□□□□ 0.37
MSH4O15457 AC068587.3-201ENST00000526613 355 ntBASIC17.36■□□□□ 0.37
MSH4O15457 PTP4A1P2-201ENST00000546033 454 ntBASIC17.36■□□□□ 0.37
MSH4O15457 BTNL10-201ENST00000595971 695 ntBASIC17.36■□□□□ 0.37
MSH4O15457 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 AC073347.1-201ENST00000421633 2643 ntBASIC17.36■□□□□ 0.37
MSH4O15457 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
MSH4O15457 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
MSH4O15457 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
MSH4O15457 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms