Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NAV1-210ENST00000593583 726 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC087392.5-201ENST00000612517 489 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC022188.1-201ENST00000620960 1664 ntBASIC11.8□□□□□ -0.52
COL6A5A8TX70 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
COL6A5A8TX70 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC11.8□□□□□ -0.52
COL6A5A8TX70 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 AL133373.2-201ENST00000623187 2828 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 SIGLEC18P-201ENST00000602271 909 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 MCC-208ENST00000514701 2855 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 AC090820.1-201ENST00000519722 591 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 FAM86B3P-203ENST00000523992 854 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 AC254633.1-201ENST00000606790 345 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 SHC1P1-201ENST00000425230 1745 ntBASIC11.79□□□□□ -0.52
COL6A5A8TX70 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
COL6A5A8TX70 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
COL6A5A8TX70 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 BANF1P3-201ENST00000412556 261 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RPS23-204ENST00000507980 836 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 FKBP4P6-201ENST00000457486 1332 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 AL008718.2-201ENST00000609206 1313 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RAN-210ENST00000541630 1475 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AL645937.2-201ENST00000396808 931 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 CFL1P6-201ENST00000400899 494 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 STK16-203ENST00000409516 895 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 AL807761.2-201ENST00000422849 729 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 KLF2P1-201ENST00000447438 1042 ntBASIC11.78□□□□□ -0.52
COL6A5A8TX70 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
COL6A5A8TX70 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms