Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CLCF1Q9UBD9 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 AL391005.1-201ENST00000623953 2435 ntBASIC13.83□□□□□ -0.19
CLCF1Q9UBD9 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 NORAD-201ENST00000565493 5339 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 BAATP1-201ENST00000412284 1225 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AC012441.1-201ENST00000446669 685 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CROCCP4-201ENST00000457096 498 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AL022328.1-201ENST00000610050 478 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CICP6-201ENST00000457191 2729 ntBASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CLCF1Q9UBD9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 MIR658-201ENST00000385210 100 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms