Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.03■□□□□ -0
VMP1Q96GC9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
VMP1Q96GC9 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.02■□□□□ -0
VMP1Q96GC9 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.02■□□□□ -0
VMP1Q96GC9 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
VMP1Q96GC9 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.02■□□□□ -0
VMP1Q96GC9 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.02■□□□□ -0
VMP1Q96GC9 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.02■□□□□ -0
VMP1Q96GC9 AC241585.1-201ENST00000433527 519 ntBASIC15.02■□□□□ -0
VMP1Q96GC9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.02■□□□□ -0
VMP1Q96GC9 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.02■□□□□ -0
VMP1Q96GC9 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.02■□□□□ -0
VMP1Q96GC9 AL079307.3-201ENST00000556114 283 ntBASIC15.02■□□□□ -0
VMP1Q96GC9 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
VMP1Q96GC9 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.02□□□□□ -0.01
VMP1Q96GC9 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.02□□□□□ -0.01
VMP1Q96GC9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
VMP1Q96GC9 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.02□□□□□ -0.01
VMP1Q96GC9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
VMP1Q96GC9 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC112504.1-201ENST00000623415 1841 ntBASIC15.01□□□□□ -0.01
VMP1Q96GC9 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC097376.2-205ENST00000610159 5334 ntBASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AL512638.1-201ENST00000457493 794 ntBASIC15.01□□□□□ -0.01
VMP1Q96GC9 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 SPCS2P1-201ENST00000561636 679 ntBASIC15.01□□□□□ -0.01
VMP1Q96GC9 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC006449.6-201ENST00000612330 2296 ntBASIC15.01□□□□□ -0.01
VMP1Q96GC9 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
VMP1Q96GC9 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VMP1Q96GC9 AC100757.3-201ENST00000622361 1406 ntBASIC15□□□□□ -0.01
VMP1Q96GC9 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VMP1Q96GC9 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 SSR4P1-203ENST00000599569 2260 ntBASIC15□□□□□ -0.01
VMP1Q96GC9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
VMP1Q96GC9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
VMP1Q96GC9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms